|
37. Loughran G., Healy N.C., Kiely P.A., Huigsloot M., Kedersha N., O’Connor R. 2005. Mystique is a new insulin-like growth factor-I-regulated PDZ-LIM domain protein that promotes cell attachement and migration and suppresses anchorage-independent growth. Mol. Biol. Cell. 16, 1811-1822.
38. Torrado M., Senatorov V.V., Trivedi R., Fariss R.N., Tomarev S.I. 2004. Pdlim2, a novel PDZ-LIM domain protein, interacts with α-actinins and filamin A. Invest. Ophth. Vis. Sci. 45, 3955-3963.
39. Kang S., Xu H., Duan X., Liu J.-J., He Z., Yu F., Zhou S., Meng X.-Q., Cao M., Kennedy G.C. 2000. PCD1, a novel gene containing PDZ and LIM domains, is overexpressed in several human cancers. Cancer Res. 60, 5296-5302.
40. Wu R.Y., Gill G.N. 1994. LIM domain recognition of a tyrosine-containing tight turn. J. Biol. Chem. 269, 25085-25090.
41. Boden S.D., Liu Y., Hair G.A., Helms J.A., Hu D., Racine M., Nanes M.S., Titus L. 1998. LMP-1, a LIM-domain protein, mediates BMP-6 effect on bone formation. Endocrinology. 139, 5125-5134.
42. Kuroda S., Tokunaga C., Kiyohara Y., Higuchi O., Konishi H., Mizuno K., Gill G.N., Kikkawa U. 1996. Protein-protein interaction of zinc finger LIM domains with PKC. J. Biol. Chem. 271, 31029-31032.
43. Nakagawa N., Hoshijima M., Oyasu M., Saito N., Tanizawa K., Kuroda S. 2000. ENH, containing PDZ and LIM domains, heart/skeletal muscle-specific protein, associates with cytoskeletal proteins through the PDZ domain. Biochem. Bioph. Res. Co. 272, 505-512.
44. Zhou Q., Ruiz-Lozano P., Martone M.E., Chen J. 1999. Cypher, a striated muscle-restricted PDZ and LIM domain-containing protein, binds to alpha-actinin-2 and protein kinase C. J. Biol. Chem. 274, 19807-19813.
45. Faulkner G., Pallavicini A., Formentin E., Comelli A., Ievolella C., Trevisan S., Bortoletto G., Scannapieco P., Salamon M., Mouly V., Valle G., Lanfranchi G. 1999. ZASP: a new Z-band alternatively spliced PDZ-motif protein. J. Cell Biol. 146, 465-475.
46. Passier R., Richardson J.A., Olson E.N. 2000. Oracle, a novel PDZ-LIM domain protein expressed in heart and skeletal muscle. Mech. Develop. 92, 277-284.
47. Vallenius T., Scharm B., Vesikansa A., Luukko K., Schäfer R., Mäkelä T.P. 2004. The PDZ-LIM protein RIL modulated actin stress fiber turnover and enhances the association of alpha-actinin with F-actin. Exp. Cell Res. 293, 117-128.
48. McKeown C.R., Han H.-F., Beckerle M.C. 2006. Molecular characterization of the Caenorhabditis elegans ALP/Enigma gene alp-1. Developmental Dynamics. 235, 530-538.
49. te Velthuis A.J.W., Isogai T., Gerrits L., Bagowski C.P. 2007. Insights into the molecular evolution of the PDZ/LIM family and identification of a novel conserved protein motif. PloS ONE. 2, e189.
50. van der Meer D.L.M., Marques I.J., Leito J.T.D., Besser J., Bakkers J., Schoonheere E., Bagowski C.P. 2006. Zebrafish cipher is important for somite formation and heart development. Dev. Biol. 299, 356-372.
51. te Velthuis A.J.W., Ott E.B., Marques I.J., Bagowski C.P. 2007. Gene expression pattern of the ALP family during zebrafish development. Gene Expression Patterns. 7, 297-305.
52. Andersen O., Ostbye T.K., Gabestad I., Nielsen C., Bardal T. 2004. Molecular characterization of a PDZ-LIM protein in Atlantic salmon (Salmo salar): a fish ortholog of the alpha-actinin-associated LIM-protein (ALP). J. Muscle Res. Cell Motil. 25, 61.
53. Szpirer C., Szpirer J., Riviere M., Hagnal A., Kiess M., Scharm B., Schäfer R. 1996. Chromosomal assignment of three rat and human H-rev genes, putative tumor suppressors, down-regulated in malignantly HRAS-transformed cells. Mamm. Genome. 7, 701-703.
54. Venter J.C., Adams M.D., Myers E.W., et al. 2001. The sequence of the human genome. Science. 291, 1304-1351.
55. Lander E.S., Linton L.M., Birren B., et al. 2001. Initial sequencing and analysis of the human genome. Nature. 409, 860-921.
56. Subramanian G., Adams M.D., Venter J.C., Broder S. 2001. Implications of the human genome for understanding human biology and medicine. J. Am. Med. Assn. 286, 2296-2307.
57. Modrek B., Lee C. 2002. A genomic view of alternative splicing. Nat. Genet. 30, 13-19.
58. Kopelman N.M., Lancet D., Yanai I. 2005. Alternative splicing and gene duplication are inversely correlated evolutionary mechanisms. Nat. Genet. 37, 588-589.
59. Huang C., Zhou Q., Liang P., Hollander M.S., Sheikh F., Li X., Greaser M., Shelton G.D., Evans S., Chen J. 2003. Characterization and in vivo analysis of splice variants of Cypher. J. Biol. Chem. 278, 7360-7365.
60. Niederländer N., Fayein N.A., Auffray C., Pomiès P. 2004. Characterization of a new human isoform of the enigma homolog family specifically expressed in skeletal muscle. Biochem. Biophys. Res. Co. 325, 1304-1311.
61. Pomiès P., Macalma T., Beckerle M.C. 1999. Purification and characterization of an alpha-actinin-binding PDZ-LIM protein that is up-regulated during muscle differentiation. J. Biol. Chem. 274, 29242-29250.
62. Zhou Q., Chu P.-H., Huang C., Cheng C.-F., Martone M.E., Knoll G., Shelton G.D., Evans S., Chen J. 2001. Ablation of Cypher, a PDZ-LIM domain Z-line protein, causes a severe form of congenital myopathy. J. Cell Biol. 155, 605-612.
63. Vatta M., Mohapatra B., Jimenez S., Sanchez X., Faulkner G., Perles Z., Sinagra G., Lin J.H., Vu T.M., Zhou Q., Bowles K.R., DiLenarda A., Schimmenti L., Fox M., Chrisco M.A., Murphy R.T., McKenna W., Elliott P., Bowles N.E., Chen J., Valle G., Towbin J.A. 2003. Mutations in Cypher/ZASP in patients with dilated cardiomyopathy and left ventricular non-compaction. J. Am. Coll. Cardiol. 42, 2014-2027
64. Lasorella A., Iavarone A. 2006. The protein ENH is a cytoplasmic sequestration factor for Id2 in normal and tumor cells from the nervous system. Proc. Natl. Acad. Sci. USA. 103, 4976-4981.
65. Ueki N., Seki N., Yano K., Masuho Y., Saito T., Muramatsu M.-a. 1999. Isolation, tissue expression, and chromosomal assignment of a human LIM protein gene, showing homology to rat Enigma homologue (ENH). J. Hum. Genet. 44, 256-260.
66. Pashmforoush M., Pomiès P., Peterson K.L., Kubalak S., Ross J. Jr., Hefti A., Aebi U., Beckerle M.C., Chien K.R. 2001. Adult mice deficient in actinin-associated LIM-domain protein reveal a developmental pathway for right ventricular cardiomyopathy. Nat. Med. 7, 591-597.
67. Jo K., Rutten B., Bunn R.C., Bredt D.S. 2001. Actinin-associated LIM protein-deficient mice maintain normal development and structure of skeletal muscle. Mol. Cell. Biol. 21, 1682-1687.
68. Altherr M.R., Bengtsson U., Markovich R.P., Winokur S.T. 1995. Efforts toward understanding the molecular basis of fascioscapulohumeral muscular dystrophy. Muscle Nerve. 2, S32-S38.
69. Vallenius T., Luukko K., Mäkelä T.P. 2000. CLP-36 PDZ-LIM protein associates with nonmuscle alpha-actinin-1 and alpha-actinin-4. J. Biol. Chem. 275, 11100-11105.
70. Kotaka M., Lau Y.-m., Cheung K.-k., Lee S.M.Y., Li H.-y., Chan W.-y., Fung K.-p., Lee C.-y., Waye M.M.Y., Tsui S.K.W. 2001. Elfin is expressed during early heart development. J. Cell. Biochem. 83, 463-472.
71. Guy P.M., Kenny D.A., Gill G.N. 1999. The PDZ domain of the LIM protein Enigma binds to beta-tropomyosin. Mol. Biol. Cell. 10, 1973-1984.
72. Bauer K., Kratzer M., Otte M., de Quintana K.L., Hagmann J., Arnold G.J., Eckerskom C., Lottspeich F., Siess W. 2000. Human CLP36, a PDZ-domain and LIM-domain protein, binds to alpha-actinin-1 and associates with actin filaments and stress fibers in activated platelets and endothelial cells. Blood. 96, 4236-4245.
73. Krause A., Zacharias W., Camarata T., Linkhart B., Law E., Lischke A., Miljan E., Simon H.-G. 2004. Tbx5 and Tbx4 transcription factors interact with a new chicken PDZ-LIM protein in limb and heart development. Dev. Biol. 273, 106-120.
74. Camarata T., Bimber B., Kulisz A., Chew T.-L., Yeung J., Simon H.-G. 2006. LMP4 regulates Tbx5 protein subcellular localization and activity. J. Cell Biol. 174, 339-348.
75. Vallenius T. 2004. Characterization of actin stress fibers: involvement of PDZ-LIM adapter proteins and the novel Clik1 kinase. Academic dissertation.
76. Arimura T., Hayashi T., Terada H., Lee S.-Y., Zhou Q., Takahashi M., Ueda K., Nouchi T., Honda S., Shibutani M., Hirose M., Chen J., Park J.-E., Yasunami M., Hayashi H., Kimura A. 2004. A Cypher/ZASP mutation associated with dilated cardiomyopathy alters the binding affinity to protein kinase C. J. Biol. Chem. 279, 6746-6752.
77. Maeno-Hikichi Y., Chang S., Matsumura K., Lai M., Lin H., Nakagawa N., Kuroda S., Zhang J.-f. 2003. A PKCε-ENH-channel complex specifically modulates N-type Ca2+ channels. Nat. Neurosci. 6, 468-475.
78. Wu R.-y., Durick K., Songyang Z., Cantley L.C., Taylor S.S., Gill G.N. 1996. Specificity of LIM domain interactions with receptor tyrosine kinases. J. Biol. Chem. 271, 15934-15941.
79. Frey N., Olson E.N. 2002. Calsarcin-3, a novel skeletal muscle-specific member of the calsarcin family, interacts with multiple Z-disc proteins. J. Biol. Chem. 277, 13998-14004.
80. Erdmann K.S. 2003. The protein tyrosine phosphatase PTP-Basophil/Basophil-like: interacting proteins and molecular functions. Eur. J. Biochem. 270, 4789-4798.
81. Meinhold-Heerlein I., Stenner-Liewen F., Liewen H., Kitada S., Krajewska M., Krajewski S., Zapata J.M., Monks A., Scudiero D.A., Bauknecht T., Reed J.C. 2001. Expression and potential role of Fas-associated phosphatase-1 in ovarian cancer. Am. J. Pathol. 158, 1335-1344.
82. Erdmann K.S., Kuhlmann J., Lessmann V., Herrmann L., Eulenburg V., Muller O., Heumann R. 2000. The Adematous Polyposis Coli-protein (APC) interacts with the protein tyrosine phosphatase PTP-BL via an alternatively spliced PDZ domain. Oncogene. 19, 3894-3901.
83. Nelson W.J., Nusse R. 2004. Convergence of Wnt, β-catenin, and cadherin pathways. Science. 303, 1483-1487.
84. Hermann L., Dittmar T., Erdmann K.S. 2003. The protein tyrosine phosphatase PTP-BL associates with the midbody and is involved in the regulation of cytokinesis. Mol. Biol. Cell. 14, 230-240.
85. Wansink D.G., Peters W., Schaafsma I., Sutmuller R.P.M., Oerlemans F., Adena G.J., Wieringa B., van der Zee C.E.E.M., Hendriks W. 2004. Mild inpairment of motor nerve repair in mice lacking PTP-BL tyrosine phosphatase activity. Physiol. Genomics. 19, 50-60.
86. Cuppen E., van Ham M., Wansink D.G., de Leeuw A., Wieringa B., Hendriks W. 2000. The zyxin-related protein TRIP6 interacts with PDZ motifs in the adaptor protein RIL and the protein tyrosine phosphatase PTP-BL. Eur. J. Cell Biol. 79, 283-293.
87. Taylor K.A., Taylor D.W., Schachat F. 2000. Isoforms of α-actinin from cardiac, smooth, and skeletal muscle form polar arrays of actin filaments. J. Cell Biol. 149, 635-645.
88. Honda K., Yamada T., Endo R., Ino Y., Gotoh M., Tsuda H., Yamada Y., Chiba H., Hirohashi S. 1998. Actinin-4, a novel actin-bundling protein, associated with cell motility and cancer invasion. J. Cell Biol. 140, 1383-1393.
89. Mills M.A., Yang N., Weinberg R.P., van der Woude D.L., Beggs A.H., Eastel S., North K.N. 2001. Differential expression of the actin-binding proteins, α-actinin-2 and –3, in different species: implications for the evolution of functional redundancy. Hum. Mol. Genet. 10, 1335-1346.
90. Broderick M.J.F., Winder S.J. 2005. Spectrin, α-actinin, and dystrophin. Adv. Protein Chem. 70, 203-246.
91. Otey C.A., Carpen O. 2004. α-Actinin revisited: a fresh look at an old player. Cell Motil. Cytoskel. 58, 104-111.
92. Schulz T.W., Nakagawa T., Licznerski P., Pawlak V., Kolleker A., Rozov A., Kim J., Dittgen T., Köhr G., Sheng M., Seeburg P.H., Osten P. 2004. Actin/alpha-actinin-dependent transport of AMPA receptors in dendritic spines: role of the PDZ-LIM protein RIL. J. Neurosci. 24, 8584-8594.
93. Fu S.-l., Waha A., Vogt P.K. 2000. Identification and characterization of genes upregulated in cells transformed by v-Jun. Oncogene. 19, 3537-3545.
94. Vanaja D.K., Ballman K.V., Morlan B.W., Cheville J.C., Neumann R.M., Lieber M.M., Tindall D.J., Young C.Y.F. 2006. PDLIM4 repression by hypermethylation as a potential biomarker for prostate cancer. Clin. Cancer Res. 12, 1128-1136.
95. Welsh J.B., Sapinoso L.M., Su A.I., et al. 2001. Analysis of gene expression identifies candidate markers and pharmacological targets in prostate cancer. Cancer Res. 61, 5974-5978.
96. Yu Y.P., Landsittel D., Jing L., et al. 2004. Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy. J. Clin. Oncol. 22, 2790-2799.
97. Mills J.C., Syder A.J., Hong C.V., Guruge J.L., Raaii F., Gordon J.I. 2001. A molecular profile of the mouse gastric parietal cell with and without exposure to Helicobacter pylori. Proc. Natl. Acad. Sci. USA. 98, 13687-13692.
98. Liu C., Goshu E., Wells A., Fang C.-M. 2003. Identification of the downstream targets of SIM1 and ARNT2, a pair of transcription factors essential for neuroendocrine cell differentiation. J. Biol. Chem. 278, 44857-44867.
99. Gerhardinger C., Costa M.B., Coulombe M.C., Toth I., Hoehn T., Grosu P. 2005. Expression of acute-phase response proteins in retinal Müller cells in diabetes. Invest. Ophth. Vis. Sci. 46, 349-357.
100. Omasu F., Ezura Y., Kajita M., Ishida R., Kodaira M., Yoshida H., Suzuki T., Hosoi T., Inoue S., Shiraki M., Orimo H., Emi M. 2003. Association of genetic variation of the RIL gene, encoding a PDZ-LIM domain protein and localized in 5q31.1, with low bone mineral density in adult Japanese women. J. Hum. Genet. 48, 342-345.
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